Publications


2016:

Konrad Wojdan, Magdalena Ogłuszka, Rafał Ostap. MedStream Designer: a new software solution for patient search and analyses that supports Evidence-based Medicine and Personalized Medicine. Technical report. Transition Technologies S.A., 20 Dec 2016


2015:

Duchnowska R, Jassem J, Goswami CP, Dundar M, Gökmen-Polar Y, Li L, Woditschka S, Biernat W, Sosińska-Mielcarek K, Czartoryska-Arłukowicz B, Radecka B, Tomasevic Z, Stępniak P, Wojdan K, Sledge GW Jr, Steeg PS, Badve S. –  Predicting early brain metastases based on clinicopathological factors and gene expression analysis in advanced HER2-positive breast cancer patients., Journal of Neuro-Oncology, doi: 10.1007/s11060-014-1704-y, Epub: 2015 Jan 6.


2014:

Hennig EE, Mikula M, Goryca K, Paziewska A, Ledwon J, Nesteruk M, Woszczynski M, Walewska-Zielecka B, Pysniak K, Ostrowski J. Extracellular matrix and cytochrome P450 gene expression can distinguish steatohepatitis from steatosis in mice. J Cell Mol Med. 2014 Jun 9. doi: 10.1111/jcmm.12328.
Monika Markowska, Piotr Stępniak, Konrad Wojdan and Konrad ŚwirskiSmooth muscle contamination analysis in clinical oncology gene expression research, Acta Biochimica Polonica, 61(2), 333-340


2013:

Nesteruk M, Hennig EE, Mikula M, Karczmarski J, Dzwonek A, Goryca K, Rubel T, Paziewska A, Woszczynski M, Ledwon J, Dabrowska M, Dadlez M, Ostrowski J. Mitochondrial-related proteomic changes during obesity and fasting in mice are greater in the liver than skeletal muscles. Funct Integr Genomics. 2014 Mar;14(1):245-59. doi: 10.1007/s10142-013-0342-3. Epub 2013 Nov 1.
Piotr Stępniak, Matthew Maycock, Konrad Wojdan, Monika Markowska, Serhiy Perun, Aashish Srivastava, Lucjan S. Wyrwicz and Konrad Świrski: “Microarray Inspector: tissue cross contamination detection tool for microarray data“, Acta Biochimica Polonica, 60(4), 647-655
Piotr Stępniak, Konrad Wojdan, Joanna Chodzyńska, Lucjan Wyrwicz and Konrad Świrski: “Predictive systems in oncology based on real life patients records.”, Proceedings of the IADIS European Conference on Data Mining, Prague, Czech Republic, 22-24 July 2013
Martina Geier, Andreas Braun, Patrik Fladischer, Piotr Stepniak, Florian Rudroff, Christian Hametner, Marko D Mihovilovic, Anton Glieder: “Double site saturation mutagenesis of the human cytochrome P450 2D6 results in regioselective steroid hydroxylation.” FEBS Journal, 2013, DOI: 10.1111/febs.12270


2012:

K. Wojdan, B. Ruszczycki, D. Michalk, K. Świrski: „STORAGE OPERATION EXPERT – The Software Solution for Simulation and Optimization of Gas Storage Plant Operation”, Solution Mining Research Institute – Fall 2012 Technical Conference, Bremen, Germany, 1-2 October 2012
A Riebel, HM Dudek, G de Gonzalo, P Stępniak, L Rychlewski, MW Fraaije, Expanding the set of rhodococcal Baeyer–Villiger monooxygenases by high-throughput cloning, expression and substrate screening, Applied Microbiology and Biotechnology 2012, Doi:10.1007/s00253-011-3823-0
Gaj P, Maryan N, Hennig EE, Ledwon JK, Paziewska A, Majewska A, Karczmarski J, Nesteruk M, Wolski J, Antoniewicz AA, Przytulski K, Rutkowski A, Teumer A, Homuth G, Starzyńska T, Regula J, Ostrowski J. Pooled Sample-Based GWAS: A Cost-Effective Alternative for Identifying Colorectal and Prostate Cancer Risk Variants in the Polish Population. PLoS One. 2012;7(4):e35307. Epub 19.04.2012.


2011:

Hanna M Dudek, Gonzalo de Gonzalo, Daniel E Torres Pazmino, Piotr Stępniak, Lucjan S Wyrwicz, Leszek Rychlewski, Marco W Fraaije, Mapping the substrate binding site of phenylacetone monooxygenase from Thermobifida fusca by mutational analysis, Applied and Environmental Microbiology, 16 (77) 2011, 5730-5738
K. Wojdan, K. Świrski, M. Warchol, G. Jarmoszewicz, T. Chomiak: „Bio-inspired process control”, book chapter  “Bio-inspired computing and communication networks” edited by Yang Xiao, CRC Press – Taylor and Francis Group, ISBN 978-1-4200-8032-2, Boca Raton, USA, March 2011
K. Wojdan, K. Świrski, M. Warchol, J. Milewski, A. Miller: “A Practical Approach To Combustion Process Optimization Using an Improved Immune Optimizer”,  Sustainable Research and Innovation Proceedings, vol. 3, Kenya, 2011
Marcin Nowosielski, Marcin Hoffmann, Lucjan S Wyrwicz, Piotr Stępniak, Dariusz M Plewczynski, Michal Lazniewski, Krzysztof Ginalski, Leszek Rychlewski, Detailed mechanism of squalene epoxidase inhibition by terbinafine, Journal of Chemical Information and Modeling 51 (2) 2011, 455–462
Moes-Sosnowska J, Chodzyńska J, Kupryjańczyk J, “BRIP1/FANCJ/BACH1 polymorphic variants – P919S, E879E – prognostic/predictive significance in ovarian cancer in Polish population” poster, 4th International Conference on Ovarian Cancer Screening 2011, London
A Felisiak-Gołąbek, A Rembiszewska, L. Szafron, J Chodzyńska, E. Kwiatkowska, I. Rzepecka, A. Dansonka-Mieszkowska, A. Podgorska and J.Kupryjanczyk  “p16INK4a, p19INK4d AND CDC25B as negative predictive and prognostic factors in taxane-platinum-treated ovarian cancer patients”, poster,  XVth Gliwice Scientific Meetings 2011
Grabowska AD, Wandel MP, Łasica AM, Nesteruk M, Roszczenko P, Wyszyńska A, Godlewska R, Jagusztyn-Krynicka EK. Campylobacter jejuni dsb gene expression is regulated by iron in a Fur-dependent manner and by a translational coupling mechanism. BMC Microbiol. 2011;11:166.